CRISPRone

CRISPRone report for GCA_003968445.1_ASM396844v1

♦ Seq 1: RXSZ01000132.1 Pseudomonas aeruginosa strain MRSN9718 MRSN9718_contig00132, whole genome shotgun sequence

⇒Summary: seq-len = 35163 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35076-35164 bp Zoom in on locus 1 x2 CRISPR array Location: 35076-35164 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 35076-35164 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35076-35164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXSZ01000133.1 Pseudomonas aeruginosa strain MRSN9718 MRSN9718_contig00133, whole genome shotgun sequence

⇒Summary: seq-len = 576 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31-539 bp Zoom in on locus 1 x9 CRISPR array Location: 31-539 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 31-539 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31-539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXSZ01000118.1 Pseudomonas aeruginosa strain MRSN9718 MRSN9718_contig00118, whole genome shotgun sequence

⇒Summary: seq-len = 80163 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59243-71986 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 59243-60160 bp Gene: unk Type: unknown Location: 60311-61360 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 61403-63388 bp Gene: unk Type: unknown Location: 63513-63977 bp Gene: unk Type: unknown Location: 70451-71362 bp Gene: cd06127:DEDDh Type: Type-I Location: 71441-71986 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RXSZ01000134.1 Pseudomonas aeruginosa strain MRSN9718 MRSN9718_contig00134, whole genome shotgun sequence

⇒Summary: seq-len = 39295 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-11325 bp Zoom in on locus 1 x18 x23 CRISPR array Location: 0-1044 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1044 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 1227-1790 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1794-2822 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2833-3816 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3803-5104 bp Gene: COG1203:cas3 Type: Type-I Location: 5515-8745 bp Gene: cd09718:cas1 Type: universal Location: 8742-9716 bp CRISPR array Location: 9977-11325 bp Num of repeats: 23 Spacers: s18-s39 CRISPR array Location: 9977-11325 bp Num of repeats: 23 Spacers: s18-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-1044 bp]: array | spacers
           [Locus range 9977-11325 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)