CRISPRone

CRISPRone report for GCA_003968565.1_ASM396856v1

♦ Seq 1: RXTW01000056.1 Pseudomonas aeruginosa strain MRSN435288 MRSN435288A_contig00056, whole genome shotgun sequence

⇒Summary: seq-len = 1384 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 360-1167 bp Zoom in on locus 1 x14 CRISPR array Location: 360-1167 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 360-1167 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 360-1167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXTW01000081.1 Pseudomonas aeruginosa strain MRSN435288 MRSN435288A_contig00081, whole genome shotgun sequence

⇒Summary: seq-len = 48667 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218-10485 bp Zoom in on locus 1 x13 x16 CRISPR array Location: 218-966 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 218-966 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1226-2200 bp Gene: COG1203:cas3 Type: Type-I Location: 2197-5436 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5494-6798 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6785-7768 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7779-8807 bp Gene: cd09739:cas6f Type: other Location: 8811-9374 bp CRISPR array Location: 9558-10485 bp Num of repeats: 16 Spacers: s13-s27 CRISPR array Location: 9558-10485 bp Num of repeats: 16 Spacers: s13-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 218-966 bp]: array | spacers
           [Locus range 9558-10485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)