CRISPRone

CRISPRone report for GCA_003968985.1_ASM396898v1

♦ Seq 1: RXUK01000024.1 Pseudomonas aeruginosa strain MRSN29192 MRSN29192_contig00024, whole genome shotgun sequence

⇒Summary: seq-len = 65290 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54112-64311 bp Zoom in on locus 1 x7 x21 CRISPR array Location: 54112-54500 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 54112-54500 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09739:cas6f Type: other Location: 54683-55246 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55250-56278 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56289-57272 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57259-58563 bp Gene: COG1203:cas3 Type: Type-I Location: 58621-61851 bp Gene: cd09718:cas1 Type: universal Location: 61848-62822 bp CRISPR array Location: 63084-64311 bp Num of repeats: 21 Spacers: s7-s26 CRISPR array Location: 63084-64311 bp Num of repeats: 21 Spacers: s7-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 54112-54500 bp]: array | spacers
           [Locus range 63084-64311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXUK01000002.1 Pseudomonas aeruginosa strain MRSN29192 MRSN29192_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 604266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 505416-506405 bp Zoom in on locus 1 x17 CRISPR array Location: 505416-506405 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 505416-506405 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 505416-506405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)