CRISPRone

CRISPRone report for GCA_003969035.1_ASM396903v1

♦ Seq 1: RXUM01000007.1 Pseudomonas aeruginosa strain MRSN25762 MRSN25762_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 143039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142072-142820 bp Zoom in on locus 1 x13 CRISPR array Location: 142072-142820 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 142072-142820 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142072-142820 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXUM01000039.1 Pseudomonas aeruginosa strain MRSN25762 MRSN25762_contig00039, whole genome shotgun sequence

⇒Summary: seq-len = 48912 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38096-48695 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38096-39204 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38096-39204 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39387-39950 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39954-40982 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40993-41976 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41963-43264 bp Gene: COG1203:cas3 Type: Type-I Location: 43675-46905 bp Gene: cd09718:cas1 Type: universal Location: 46902-47876 bp CRISPR array Location: 48128-48695 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48128-48695 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38096-39204 bp]: array | spacers
           [Locus range 48128-48695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)