CRISPRone

CRISPRone report for GCA_003969055.1_ASM396905v1

♦ Seq 1: RXUP01000095.1 Pseudomonas aeruginosa strain MRSN2444 MRSN2444_contig00095, whole genome shotgun sequence

⇒Summary: seq-len = 50986 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32068-39253 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 32068-33126 bp Gene: pfam13280:WYL Type: other Location: 37100-38146 bp Gene: pfam13280:WYL Type: other Location: 38381-39253 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXUP01000138.1 Pseudomonas aeruginosa strain MRSN2444 MRSN2444_contig00138, whole genome shotgun sequence

⇒Summary: seq-len = 46207 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34041-45267 bp Zoom in on locus 1 x25 x19 CRISPR array Location: 34041-35511 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 34041-35511 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 35760-36323 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36327-37355 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 37366-38349 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38336-39640 bp Gene: COG1203:cas3 Type: Type-I Location: 39698-42928 bp Gene: cd09718:cas1 Type: universal Location: 42925-43899 bp CRISPR array Location: 44160-45267 bp Num of repeats: 19 Spacers: s25-s42 CRISPR array Location: 44160-45267 bp Num of repeats: 19 Spacers: s25-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34041-35511 bp]: array | spacers
           [Locus range 44160-45267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXUP01000010.1 Pseudomonas aeruginosa strain MRSN2444 MRSN2444_contig00010, whole genome shotgun sequence

⇒Summary: seq-len = 21809 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9959-20225 bp Zoom in on locus 1 x5 x13 CRISPR array Location: 9959-10232 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 9959-10232 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09641:cas3HD Type: Type-I Location: 11005-13686 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 13689-15257 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 15254-15784 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15794-16936 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16938-17600 bp Gene: pfam08798:cas6e Type: other Location: 17575-18186 bp Gene: cd09719:cas1 Type: universal Location: 18213-19103 bp Gene: pfam09707:cas2 Type: universal Location: 19100-19399 bp CRISPR array Location: 19464-20225 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 19464-20225 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9959-10232 bp]: array | spacers
           [Locus range 19464-20225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)