CRISPRone

CRISPRone report for GCA_003969155.1_ASM396915v1

♦ Seq 1: RXUY01000120.1 Pseudomonas aeruginosa strain MRSN1948 MRSN1948_contig00120, whole genome shotgun sequence

⇒Summary: seq-len = 48377 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38102-48160 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 38102-38669 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38102-38669 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 38852-39415 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39419-40447 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40458-41441 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41428-42729 bp Gene: COG1203:cas3 Type: Type-I Location: 43140-46370 bp Gene: cd09718:cas1 Type: universal Location: 46367-47341 bp CRISPR array Location: 47593-48160 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 47593-48160 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38102-38669 bp]: array | spacers
           [Locus range 47593-48160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXUY01000041.1 Pseudomonas aeruginosa strain MRSN1948 MRSN1948_contig00041, whole genome shotgun sequence

⇒Summary: seq-len = 49352 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14152-19599 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 14152-15021 bp Gene: unk Type: unknown Location: 15362-15574 bp Gene: unk Type: unknown Location: 15680-17818 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 17818-19599 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXUY01000085.1 Pseudomonas aeruginosa strain MRSN1948 MRSN1948_contig00085, whole genome shotgun sequence

⇒Summary: seq-len = 1114 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 327-895 bp Zoom in on locus 1 x10 CRISPR array Location: 327-895 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 327-895 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 327-895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)