CRISPRone

CRISPRone report for GCA_003969195.1_ASM396919v1

♦ Seq 1: RXVD01000013.1 Pseudomonas aeruginosa strain MRSN1899 MRSN1899_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 499967 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498482-499230 bp Zoom in on locus 1 x13 CRISPR array Location: 498482-499230 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 498482-499230 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498482-499230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXVD01000038.1 Pseudomonas aeruginosa strain MRSN1899 MRSN1899_contig00038, whole genome shotgun sequence

⇒Summary: seq-len = 80951 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37716-47795 bp Zoom in on locus 1 x13 x13 CRISPR array Location: 37716-38465 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 37716-38465 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 38648-39211 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39215-40243 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40254-41237 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41224-42528 bp Gene: COG1203:cas3 Type: Type-I Location: 42586-45816 bp Gene: cd09718:cas1 Type: universal Location: 45813-46787 bp CRISPR array Location: 47048-47795 bp Num of repeats: 13 Spacers: s13-s24 CRISPR array Location: 47048-47795 bp Num of repeats: 13 Spacers: s13-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37716-38465 bp]: array | spacers
           [Locus range 47048-47795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXVD01000006.1 Pseudomonas aeruginosa strain MRSN1899 MRSN1899_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 191125 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26802-36086 bp Zoom in on locus 1 x23 CRISPR array Location: 26802-28297 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 26802-28297 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 28477-28767 bp Gene: cd09721:cas1 Type: universal Location: 28777-29817 bp Gene: pfam01930:cas4 Type: Type-I Location: 29821-30453 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 30472-31341 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 31338-33131 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 33128-33802 bp Gene: cd09641:cas3HD Type: Type-I Location: 33852-36086 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26802-28297 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)