CRISPRone

CRISPRone report for GCA_003969255.1_ASM396925v1

♦ Seq 1: RXVK01000070.1 Pseudomonas aeruginosa strain MRSN17849 MRSN17849_contig00070, whole genome shotgun sequence

⇒Summary: seq-len = 7827 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218-727 bp Zoom in on locus 1 x9 CRISPR array Location: 218-727 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 218-727 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 218-727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXVK01000104.1 Pseudomonas aeruginosa strain MRSN17849 MRSN17849_contig00104, whole genome shotgun sequence

⇒Summary: seq-len = 48745 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 217-10604 bp Zoom in on locus 1 x22 x3 CRISPR array Location: 217-1519 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 217-1519 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 1783-2757 bp Gene: COG1203:cas3 Type: Type-I Location: 2754-5984 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6395-7696 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7683-8666 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8677-9705 bp Gene: cd09739:cas6f Type: other Location: 9709-10272 bp CRISPR array Location: 10457-10604 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 10457-10604 bp Num of repeats: 3 Spacers: s22-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 217-1519 bp]: array | spacers
           [Locus range 10457-10604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)