CRISPRone

CRISPRone report for GCA_003969305.1_ASM396930v1

♦ Seq 1: RXVP01000138.1 Pseudomonas aeruginosa strain MRSN16740 MRSN16740_contig00138, whole genome shotgun sequence

⇒Summary: seq-len = 7757 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6792-7539 bp Zoom in on locus 1 x13 CRISPR array Location: 6792-7539 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 6792-7539 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6792-7539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXVP01000125.1 Pseudomonas aeruginosa strain MRSN16740 MRSN16740_contig00125, whole genome shotgun sequence

⇒Summary: seq-len = 48921 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 219-10944 bp Zoom in on locus 1 x17 x14 CRISPR array Location: 219-1208 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 219-1208 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1465-2436 bp Gene: COG1203:cas3 Type: Type-I Location: 2433-5663 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6074-7375 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7362-8345 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8356-9384 bp Gene: cd09739:cas6f Type: other Location: 9388-9951 bp CRISPR array Location: 10136-10944 bp Num of repeats: 14 Spacers: s17-s29 CRISPR array Location: 10136-10944 bp Num of repeats: 14 Spacers: s17-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 219-1208 bp]: array | spacers
           [Locus range 10136-10944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)