CRISPRone

CRISPRone report for GCA_003969535.1_ASM396953v1

♦ Seq 1: RXTX01000020.1 Pseudomonas aeruginosa strain MRSN409937 MRSN409937B_contig00020, whole genome shotgun sequence

⇒Summary: seq-len = 49216 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37419-48506 bp Zoom in on locus 1 x20 x17 CRISPR array Location: 37419-38584 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37419-38584 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38768-39331 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39335-40363 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40374-41357 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41344-42645 bp Gene: COG1203:cas3 Type: Type-I Location: 43056-46286 bp Gene: cd09718:cas1 Type: universal Location: 46283-47257 bp CRISPR array Location: 47518-48506 bp Num of repeats: 17 Spacers: s20-s35 CRISPR array Location: 47518-48506 bp Num of repeats: 17 Spacers: s20-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37419-38584 bp]: array | spacers
           [Locus range 47518-48506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXTX01000072.1 Pseudomonas aeruginosa strain MRSN409937 MRSN409937B_contig00072, whole genome shotgun sequence

⇒Summary: seq-len = 63751 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 361-1109 bp Zoom in on locus 1 x13 CRISPR array Location: 361-1109 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 361-1109 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 361-1109 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)