CRISPRone

CRISPRone report for GCA_003969715.1_ASM396971v1

♦ Seq 1: RXVS01000010.1 Pseudomonas aeruginosa strain MRSN16344 MRSN16344_contig00010, whole genome shotgun sequence

⇒Summary: seq-len = 20522 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9949-20524 bp Zoom in on locus 1 x15 x8 CRISPR array Location: 9949-10833 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 9949-10833 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09641:cas3HD Type: Type-I Location: 11608-14289 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 14292-15860 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 15857-16387 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 16397-17539 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 17541-18203 bp Gene: pfam08798:cas6e Type: other Location: 18178-18789 bp Gene: cd09719:cas1 Type: universal Location: 18816-19592 bp Gene: pfam09707:cas2 Type: universal Location: 19703-20002 bp CRISPR array Location: 20067-20524 bp Num of repeats: 8 Spacers: s15-s21 CRISPR array Location: 20067-20524 bp Num of repeats: 8 Spacers: s15-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9949-10833 bp]: array | spacers
           [Locus range 20067-20524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXVS01000011.1 Pseudomonas aeruginosa strain MRSN16344 MRSN16344_contig00011, whole genome shotgun sequence

⇒Summary: seq-len = 1807 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33-184 bp Zoom in on locus 1 x3 CRISPR array Location: 33-184 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 33-184 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33-184 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXVS01000043.1 Pseudomonas aeruginosa strain MRSN16344 MRSN16344_contig00043, whole genome shotgun sequence

⇒Summary: seq-len = 1062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229-737 bp Zoom in on locus 1 x9 CRISPR array Location: 229-737 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 229-737 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 229-737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)