CRISPRone

CRISPRone report for GCA_003969785.1_ASM396978v1

♦ Seq 1: RXWD01000029.1 Pseudomonas aeruginosa strain MRSN1380 MRSN1380_contig00029, whole genome shotgun sequence

⇒Summary: seq-len = 81355 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37374-47693 bp Zoom in on locus 1 x16 x14 CRISPR array Location: 37374-38303 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37374-38303 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38486-39049 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39053-40081 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40092-41075 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41062-42366 bp Gene: COG1203:cas3 Type: Type-I Location: 42424-45654 bp Gene: cd09718:cas1 Type: universal Location: 45651-46625 bp CRISPR array Location: 46886-47693 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 46886-47693 bp Num of repeats: 14 Spacers: s16-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37374-38303 bp]: array | spacers
           [Locus range 46886-47693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXWD01000002.1 Pseudomonas aeruginosa strain MRSN1380 MRSN1380_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 223659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 176515-177683 bp Zoom in on locus 1 x20 CRISPR array Location: 176515-177683 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 176515-177683 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 176515-177683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)