CRISPRone

CRISPRone report for GCA_003969795.1_ASM396979v1

♦ Seq 1: RXWA01000136.1 Pseudomonas aeruginosa strain MRSN15566 MRSN15566_contig00136, whole genome shotgun sequence

⇒Summary: seq-len = 46892 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218-10420 bp Zoom in on locus 1 x8 x20 CRISPR array Location: 218-667 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 218-667 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 927-1901 bp Gene: COG1203:cas3 Type: Type-I Location: 1898-5128 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5186-6490 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6477-7460 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7471-8499 bp Gene: cd09739:cas6f Type: other Location: 8503-9066 bp CRISPR array Location: 9252-10420 bp Num of repeats: 20 Spacers: s8-s26 CRISPR array Location: 9252-10420 bp Num of repeats: 20 Spacers: s8-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 218-667 bp]: array | spacers
           [Locus range 9252-10420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXWA01000132.1 Pseudomonas aeruginosa strain MRSN15566 MRSN15566_contig00132, whole genome shotgun sequence

⇒Summary: seq-len = 8129 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7045-7912 bp Zoom in on locus 1 x15 CRISPR array Location: 7045-7912 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 7045-7912 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7045-7912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)