CRISPRone

CRISPRone report for GCA_003969825.1_ASM396982v1

♦ Seq 1: RXWE01000141.1 Pseudomonas aeruginosa strain MRSN1356 MRSN1356B_contig00141, whole genome shotgun sequence

⇒Summary: seq-len = 44636 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227-10605 bp Zoom in on locus 1 x25 x6 CRISPR array Location: 227-1696 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 227-1696 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 1956-2930 bp Gene: COG1203:cas3 Type: Type-I Location: 2927-6157 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6215-7519 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7506-8489 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8500-9528 bp Gene: cd09739:cas6f Type: other Location: 9532-10095 bp CRISPR array Location: 10278-10605 bp Num of repeats: 6 Spacers: s25-s29 CRISPR array Location: 10278-10605 bp Num of repeats: 6 Spacers: s25-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227-1696 bp]: array | spacers
           [Locus range 10278-10605 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXWE01000174.1 Pseudomonas aeruginosa strain MRSN1356 MRSN1356B_contig00174, whole genome shotgun sequence

⇒Summary: seq-len = 939 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228-496 bp Zoom in on locus 1 x5 CRISPR array Location: 228-496 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 228-496 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 228-496 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)