CRISPRone

CRISPRone report for GCA_003969855.1_ASM396985v1

♦ Seq 1: RXWH01000100.1 Pseudomonas aeruginosa strain MRSN12914 MRSN12914A_contig00100, whole genome shotgun sequence

⇒Summary: seq-len = 47724 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 265-10574 bp Zoom in on locus 1 x13 x17 CRISPR array Location: 265-1013 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 265-1013 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1264-2238 bp Gene: COG1203:cas3 Type: Type-I Location: 2235-5465 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5523-6827 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6814-7797 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7808-8836 bp Gene: cd09739:cas6f Type: other Location: 8840-9403 bp CRISPR array Location: 9587-10574 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 9587-10574 bp Num of repeats: 17 Spacers: s13-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 265-1013 bp]: array | spacers
           [Locus range 9587-10574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXWH01000108.1 Pseudomonas aeruginosa strain MRSN12914 MRSN12914A_contig00108, whole genome shotgun sequence

⇒Summary: seq-len = 56269 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42146-52007 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 42146-44512 bp Gene: unk Type: unknown Location: 44905-45552 bp Gene: unk Type: unknown Location: 45618-45986 bp Gene: pfam13280:WYL Type: other Location: 46036-46911 bp Gene: unk Type: unknown Location: 46926-47459 bp Gene: unk Type: unknown Location: 47769-47948 bp Gene: unk Type: unknown Location: 48017-48256 bp Gene: pfam13280:WYL Type: other Location: 49220-50236 bp Gene: mkCas0115:csx3 Type: other Location: 50397-52007 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXWH01000073.1 Pseudomonas aeruginosa strain MRSN12914 MRSN12914A_contig00073, whole genome shotgun sequence

⇒Summary: seq-len = 91778 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91067-91514 bp Zoom in on locus 1 x8 CRISPR array Location: 91067-91514 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 91067-91514 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91067-91514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)