CRISPRone

CRISPRone report for GCA_003969885.1_ASM396988v1

♦ Seq 1: RXUD01000128.1 Pseudomonas aeruginosa strain MRSN358800 MRSN358800_contig00128, whole genome shotgun sequence

⇒Summary: seq-len = 48787 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261-11291 bp Zoom in on locus 1 x13 x23 CRISPR array Location: 261-1009 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 261-1009 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1269-2243 bp Gene: COG1203:cas3 Type: Type-I Location: 2240-5470 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5881-7182 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7169-8152 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8163-9191 bp Gene: cd09739:cas6f Type: other Location: 9195-9758 bp CRISPR array Location: 9943-11291 bp Num of repeats: 23 Spacers: s13-s34 CRISPR array Location: 9943-11291 bp Num of repeats: 23 Spacers: s13-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 261-1009 bp]: array | spacers
           [Locus range 9943-11291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXUD01000106.1 Pseudomonas aeruginosa strain MRSN358800 MRSN358800_contig00106, whole genome shotgun sequence

⇒Summary: seq-len = 863 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34-602 bp Zoom in on locus 1 x10 CRISPR array Location: 34-602 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 34-602 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34-602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXUD01000189.1 Pseudomonas aeruginosa strain MRSN358800 MRSN358800_contig00190, whole genome shotgun sequence

⇒Summary: seq-len = 220 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40-188 bp Zoom in on locus 1 x3 CRISPR array Location: 40-188 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 40-188 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40-188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RXUD01000105.1 Pseudomonas aeruginosa strain MRSN358800 MRSN358800_contig00105, whole genome shotgun sequence

⇒Summary: seq-len = 556 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 370-517 bp Zoom in on locus 1 x3 CRISPR array Location: 370-517 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 370-517 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 370-517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)