CRISPRone

CRISPRone report for GCA_003969955.1_ASM396995v1

♦ Seq 1: RXWS01000003.1 Pseudomonas aeruginosa strain MRSN11278 MRSN11278_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 132635 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107509-118289 bp Zoom in on locus 1 x14 x6 CRISPR array Location: 107509-108333 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 107509-108333 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 109109-111817 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 112179-113747 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 113744-114274 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 114284-115426 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 115428-116090 bp Gene: pfam08798:cas6e Type: other Location: 116065-116676 bp Gene: cd09719:cas1 Type: universal Location: 116703-117593 bp Gene: pfam09707:cas2 Type: universal Location: 117590-117889 bp CRISPR array Location: 117954-118289 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 117954-118289 bp Num of repeats: 6 Spacers: s14-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 107509-108333 bp]: array | spacers
           [Locus range 117954-118289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXWS01000049.1 Pseudomonas aeruginosa strain MRSN11278 MRSN11278_contig00049, whole genome shotgun sequence

⇒Summary: seq-len = 8204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218-1147 bp Zoom in on locus 1 x16 CRISPR array Location: 218-1147 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 218-1147 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 218-1147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXWS01000060.1 Pseudomonas aeruginosa strain MRSN11278 MRSN11278_contig00060, whole genome shotgun sequence

⇒Summary: seq-len = 76345 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22921-36011 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 22921-23223 bp Gene: cd09641:cas3HD Type: Type-I Location: 32905-34764 bp Gene: unk Type: unknown Location: 34937-35170 bp Gene: unk Type: unknown Location: 35285-35659 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 35706-36011 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)