CRISPRone

CRISPRone report for GCA_003970055.1_ASM397005v1

♦ Seq 1: RXWQ01000036.1 Pseudomonas aeruginosa strain MRSN11285 MRSN11285_contig00036, whole genome shotgun sequence

⇒Summary: seq-len = 77236 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36730-48361 bp Zoom in on locus 1 x20 x26 CRISPR array Location: 36730-37899 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 36730-37899 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38082-38645 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38649-39677 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39688-40671 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40658-41959 bp Gene: COG1203:cas3 Type: Type-I Location: 42370-45600 bp Gene: cd09718:cas1 Type: universal Location: 45597-46571 bp CRISPR array Location: 46832-48361 bp Num of repeats: 26 Spacers: s20-s44 CRISPR array Location: 46832-48361 bp Num of repeats: 26 Spacers: s20-s44 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36730-37899 bp]: array | spacers
           [Locus range 46832-48361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXWQ01000013.1 Pseudomonas aeruginosa strain MRSN11285 MRSN11285_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 353073 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 279742-291844 bp Zoom in on locus 1 x22 x26 CRISPR array Location: 279742-281053 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 279742-281053 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam09707:cas2 Type: universal Location: 281118-281417 bp Gene: cd09719:cas1 Type: universal Location: 281414-282304 bp Gene: pfam08798:cas6e Type: other Location: 282331-282870 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 282917-283579 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 283581-284723 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 284733-285263 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 285260-286828 bp Gene: cd09641:cas3HD Type: Type-I Location: 286831-289512 bp CRISPR array Location: 290289-291844 bp Num of repeats: 26 Spacers: s22-s46 CRISPR array Location: 290289-291844 bp Num of repeats: 26 Spacers: s22-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 279742-281053 bp]: array | spacers
           [Locus range 290289-291844 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)