CRISPRone

CRISPRone report for GCA_003970615.1_ASM397061v1

♦ Seq 1: RXWO01000154.1 Pseudomonas aeruginosa strain MRSN11536 MRSN11536A_contig00154, whole genome shotgun sequence

⇒Summary: seq-len = 11549 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 161-10489 bp Zoom in on locus 1 x8 x21 CRISPR array Location: 161-610 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 161-610 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 859-1422 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1426-2454 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2465-3448 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3435-4739 bp Gene: COG1203:cas3 Type: Type-I Location: 4797-8027 bp Gene: cd09718:cas1 Type: universal Location: 8024-8998 bp CRISPR array Location: 9259-10489 bp Num of repeats: 21 Spacers: s8-s27 CRISPR array Location: 9259-10489 bp Num of repeats: 21 Spacers: s8-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 161-610 bp]: array | spacers
           [Locus range 9259-10489 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXWO01000001.1 Pseudomonas aeruginosa strain MRSN11536 MRSN11536A_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 126460 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45022-47229 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 45022-45993 bp Gene: unk Type: unknown Location: 46102-46788 bp Gene: cd09693:cas5 Type: Type-I Location: 46822-47229 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXWO01000130.1 Pseudomonas aeruginosa strain MRSN11536 MRSN11536A_contig00130, whole genome shotgun sequence

⇒Summary: seq-len = 25792 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25245-25753 bp Zoom in on locus 1 x9 CRISPR array Location: 25245-25753 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 25245-25753 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25245-25753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)