CRISPRone

CRISPRone report for GCA_003973825.1_ASM397382v1

♦ Seq 1: RWZN01000015.1 Pseudomonas aeruginosa strain SMC1596 IPC1618_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 80177 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37870-48854 bp Zoom in on locus 1 x21 x20 CRISPR array Location: 37870-39098 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 37870-39098 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 39281-39844 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39848-40876 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40887-41870 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41857-43161 bp Gene: COG1203:cas3 Type: Type-I Location: 43219-46449 bp Gene: cd09718:cas1 Type: universal Location: 46446-47420 bp CRISPR array Location: 47685-48854 bp Num of repeats: 20 Spacers: s21-s39 CRISPR array Location: 47685-48854 bp Num of repeats: 20 Spacers: s21-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37870-39098 bp]: array | spacers
           [Locus range 47685-48854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)