CRISPRone

CRISPRone report for GCA_003973885.1_ASM397388v1

♦ Seq 1: RWZX01000008.1 Pseudomonas aeruginosa strain SC1 IPC1432_8.1, whole genome shotgun sequence

⇒Summary: seq-len = 298112 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50301-61608 bp Zoom in on locus 1 x13 x22 CRISPR array Location: 50301-51063 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 50301-51063 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 51837-54518 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 54521-56089 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 56086-56616 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 56626-57768 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 57771-58433 bp Gene: pfam08798:cas6e Type: other Location: 58480-59019 bp Gene: cd09719:cas1 Type: universal Location: 59046-59936 bp Gene: pfam09707:cas2 Type: universal Location: 59933-60232 bp CRISPR array Location: 60297-61608 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 60297-61608 bp Num of repeats: 22 Spacers: s13-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 50301-51063 bp]: array | spacers
           [Locus range 60297-61608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWZX01000007.1 Pseudomonas aeruginosa strain SC1 IPC1432_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 306458 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143988-144316 bp Zoom in on locus 1 x6 CRISPR array Location: 143988-144316 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 143988-144316 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143988-144316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWZX01000023.1 Pseudomonas aeruginosa strain SC1 IPC1432_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 101295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71266-71834 bp Zoom in on locus 1 x10 CRISPR array Location: 71266-71834 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 71266-71834 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 71266-71834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)