CRISPRone

CRISPRone report for GCA_003973985.1_ASM397398v1

♦ Seq 1: RXAF01000002.1 Pseudomonas aeruginosa strain HCF410 IPC1417_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 977590 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 444629-445257 bp Zoom in on locus 1 x11 CRISPR array Location: 444629-445257 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 444629-445257 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 444629-445257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXAF01000007.1 Pseudomonas aeruginosa strain HCF410 IPC1417_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 452679 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 717-6249 bp 2 Locus 2: 36830-51685 bp Zoom in on locus 1 x28 Zoom in on locus 2 x24 CRISPR array Location: 717-2367 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 717-2367 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 2627-3601 bp Gene: COG1203:cas3 Type: Type-I Location: 3598-6249 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 36830-37138 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 45362-45808 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 46219-47520 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 47507-48490 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 48501-49529 bp Gene: cd09739:cas6f Type: other Location: 49533-50096 bp CRISPR array Location: 50281-51685 bp Num of repeats: 24 Spacers: s28-s50 CRISPR array Location: 50281-51685 bp Num of repeats: 24 Spacers: s28-s50 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 717-2367 bp]: array | spacers
           [Locus range 50281-51685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)