CRISPRone

CRISPRone report for GCA_003974085.1_ASM397408v1

♦ Seq 1: RXAM01000010.1 Pseudomonas aeruginosa strain HCF55 IPC1407_10.1, whole genome shotgun sequence

⇒Summary: seq-len = 231075 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182016-192641 bp Zoom in on locus 1 x11 x23 CRISPR array Location: 182016-182644 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 182016-182644 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 182904-183878 bp Gene: COG1203:cas3 Type: Type-I Location: 183875-187105 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 187163-188467 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 188454-189437 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 189448-190476 bp Gene: cd09739:cas6f Type: other Location: 190480-191043 bp CRISPR array Location: 191294-192641 bp Num of repeats: 23 Spacers: s11-s32 CRISPR array Location: 191294-192641 bp Num of repeats: 23 Spacers: s11-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182016-182644 bp]: array | spacers
           [Locus range 191294-192641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXAM01000004.1 Pseudomonas aeruginosa strain HCF55 IPC1407_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 573444 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 524670-533757 bp Zoom in on locus 1 x20 CRISPR array Location: 524670-525966 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 524670-525966 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 526148-526438 bp Gene: cd09721:cas1 Type: universal Location: 526448-527488 bp Gene: pfam01930:cas4 Type: Type-I Location: 527492-528124 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 528143-529012 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 529009-530802 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 530799-531473 bp Gene: cd09641:cas3HD Type: Type-I Location: 531523-533757 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 524670-525966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)