CRISPRone

CRISPRone report for GCA_003974095.1_ASM397409v1

♦ Seq 1: RXAN01000003.1 Pseudomonas aeruginosa strain HCF483 IPC1405_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 820632 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 813556-820159 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 813556-814470 bp Gene: unk Type: unknown Location: 814802-815440 bp Gene: unk Type: unknown Location: 815440-816342 bp Gene: mkCas0090:PD-DExK Type: other Location: 816369-817109 bp Gene: pfam09702:csa5gr11 Type: Subtype-I-A Location: 819863-820159 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXAN01000018.1 Pseudomonas aeruginosa strain HCF483 IPC1405_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 49174 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 292-10192 bp Zoom in on locus 1 x15 x8 CRISPR array Location: 292-1160 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 292-1160 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 1421-2395 bp Gene: COG1203:cas3 Type: Type-I Location: 2392-5622 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5680-6984 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6971-7954 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7965-8993 bp Gene: cd09739:cas6f Type: other Location: 8997-9560 bp CRISPR array Location: 9745-10192 bp Num of repeats: 8 Spacers: s15-s21 CRISPR array Location: 9745-10192 bp Num of repeats: 8 Spacers: s15-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 292-1160 bp]: array | spacers
           [Locus range 9745-10192 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXAN01000001.1 Pseudomonas aeruginosa strain HCF483 IPC1405_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 936165 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 485688-486855 bp Zoom in on locus 1 x20 CRISPR array Location: 485688-486855 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 485688-486855 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 485688-486855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)