CRISPRone

CRISPRone report for GCA_003974115.1_ASM397411v1

♦ Seq 1: RXAO01000020.1 Pseudomonas aeruginosa strain HCF19 IPC1401_20.1, whole genome shotgun sequence

⇒Summary: seq-len = 70567 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38417-48802 bp Zoom in on locus 1 x19 x11 CRISPR array Location: 38417-39525 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38417-39525 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39775-40338 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40342-41370 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41381-42364 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42351-43655 bp Gene: COG1203:cas3 Type: Type-I Location: 43713-46943 bp Gene: cd09718:cas1 Type: universal Location: 46940-47914 bp CRISPR array Location: 48175-48802 bp Num of repeats: 11 Spacers: s19-s28 CRISPR array Location: 48175-48802 bp Num of repeats: 11 Spacers: s19-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38417-39525 bp]: array | spacers
           [Locus range 48175-48802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXAO01000001.1 Pseudomonas aeruginosa strain HCF19 IPC1401_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 977080 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 437005-437272 bp Zoom in on locus 1 x5 CRISPR array Location: 437005-437272 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 437005-437272 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 437005-437272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)