CRISPRone

CRISPRone report for GCA_003974405.1_ASM397440v1

♦ Seq 1: RWZT01000004.1 Pseudomonas aeruginosa strain Zw73_2 IPC1437_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 508855 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18606-28677 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 18606-21731 bp Gene: unk Type: unknown Location: 21995-22657 bp Gene: pfam13280:WYL Type: other Location: 22795-23670 bp Gene: unk Type: unknown Location: 23799-25550 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 25498-28677 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWZT01000001.1 Pseudomonas aeruginosa strain Zw73_2 IPC1437_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 894260 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 408737-409784 bp Zoom in on locus 1 x18 CRISPR array Location: 408737-409784 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 408737-409784 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 408737-409784 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWZT01000020.1 Pseudomonas aeruginosa strain Zw73_2 IPC1437_20.1, whole genome shotgun sequence

⇒Summary: seq-len = 48755 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 354-10795 bp Zoom in on locus 1 x17 x15 CRISPR array Location: 354-1346 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 354-1346 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1606-2580 bp Gene: COG1203:cas3 Type: Type-I Location: 2577-5807 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5865-7169 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7156-8139 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8150-9178 bp Gene: cd09739:cas6f Type: other Location: 9182-9745 bp CRISPR array Location: 9928-10795 bp Num of repeats: 15 Spacers: s17-s30 CRISPR array Location: 9928-10795 bp Num of repeats: 15 Spacers: s17-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 354-1346 bp]: array | spacers
           [Locus range 9928-10795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)