CRISPRone

CRISPRone report for GCA_003974565.1_ASM397456v1

♦ Seq 1: RXAJ01000001.1 Pseudomonas aeruginosa strain HCF238 IPC1412_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1180414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424726-425773 bp Zoom in on locus 1 x18 CRISPR array Location: 424726-425773 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 424726-425773 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424726-425773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXAJ01000014.1 Pseudomonas aeruginosa strain HCF238 IPC1412_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 71462 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38397-49116 bp Zoom in on locus 1 x21 x16 CRISPR array Location: 38397-39605 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 38397-39605 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 39789-40352 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40356-41384 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41395-42378 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42365-43669 bp Gene: COG1203:cas3 Type: Type-I Location: 43727-46957 bp Gene: cd09718:cas1 Type: universal Location: 46954-47928 bp CRISPR array Location: 48189-49116 bp Num of repeats: 16 Spacers: s21-s35 CRISPR array Location: 48189-49116 bp Num of repeats: 16 Spacers: s21-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38397-39605 bp]: array | spacers
           [Locus range 48189-49116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)