CRISPRone

CRISPRone report for GCA_003974575.1_ASM397457v1

♦ Seq 1: RXAK01000030.1 Pseudomonas aeruginosa strain HCF100 IPC1409_30.1, whole genome shotgun sequence

⇒Summary: seq-len = 35041 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 467-914 bp Zoom in on locus 1 x8 CRISPR array Location: 467-914 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 467-914 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 467-914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXAK01000004.1 Pseudomonas aeruginosa strain HCF100 IPC1409_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 703782 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 552454-553928 bp Zoom in on locus 1 x25 CRISPR array Location: 552454-553928 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 552454-553928 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 552454-553928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXAK01000039.1 Pseudomonas aeruginosa strain HCF100 IPC1409_39.1, whole genome shotgun sequence

⇒Summary: seq-len = 12770 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1478-11685 bp Zoom in on locus 1 x19 x8 CRISPR array Location: 1478-2588 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1478-2588 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2848-3822 bp Gene: COG1203:cas3 Type: Type-I Location: 3819-7049 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7107-8411 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8398-9381 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9392-10420 bp Gene: cd09739:cas6f Type: other Location: 10424-10987 bp CRISPR array Location: 11237-11685 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 11237-11685 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1478-2588 bp]: array | spacers
           [Locus range 11237-11685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)