CRISPRone

CRISPRone report for GCA_003974785.1_ASM397478v1

♦ Seq 1: RXBD01000022.1 Pseudomonas aeruginosa strain MCF199 IPC1370_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 107003 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45813-51179 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 45813-46853 bp Gene: unk Type: unknown Location: 46850-48328 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 48354-50744 bp Gene: cls001593:casR Type: Type-I Location: 50856-51179 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXBD01000037.1 Pseudomonas aeruginosa strain MCF199 IPC1370_37.1, whole genome shotgun sequence

⇒Summary: seq-len = 49266 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 304-11696 bp Zoom in on locus 1 x25 x17 CRISPR array Location: 304-1773 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 304-1773 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 2033-3007 bp Gene: COG1203:cas3 Type: Type-I Location: 3004-6240 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6651-7952 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7939-8922 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8933-9961 bp Gene: cd09739:cas6f Type: other Location: 9965-10528 bp CRISPR array Location: 10713-11696 bp Num of repeats: 17 Spacers: s25-s40 CRISPR array Location: 10713-11696 bp Num of repeats: 17 Spacers: s25-s40 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 304-1773 bp]: array | spacers
           [Locus range 10713-11696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXBD01000003.1 Pseudomonas aeruginosa strain MCF199 IPC1370_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 620951 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 360-1348 bp Zoom in on locus 1 x17 CRISPR array Location: 360-1348 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 360-1348 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 360-1348 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RXBD01000034.1 Pseudomonas aeruginosa strain MCF199 IPC1370_34.1, whole genome shotgun sequence

⇒Summary: seq-len = 66031 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 309-11382 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 309-1484 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 8232-9281 bp Gene: pfam00078:RT Type: other Location: 9664-11382 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RXBD01000031.1 Pseudomonas aeruginosa strain MCF199 IPC1370_31.1, whole genome shotgun sequence

⇒Summary: seq-len = 84605 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1367-12484 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 1367-2911 bp Gene: unk Type: unknown Location: 3995-4174 bp Gene: unk Type: unknown Location: 4358-4756 bp Gene: pfam00078:RT Type: other Location: 4906-6174 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 11354-12484 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RXBD01000067.1 Pseudomonas aeruginosa strain MCF199 IPC1370_67.1, whole genome shotgun sequence

⇒Summary: seq-len = 5237 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103-5236 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 103-384 bp Gene: pfam09827:cas2 Type: universal Location: 5042-5236 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)