CRISPRone

CRISPRone report for GCA_003974845.1_ASM397484v1

♦ Seq 1: RXBG01000002.1 Pseudomonas aeruginosa strain MCF178 IPC1366_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 734808 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 273233-283589 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 273233-274237 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 273233-274237 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 274302-274601 bp Gene: cd09719:cas1 Type: universal Location: 274598-274909 bp Gene: pfam08798:cas6e Type: other Location: 274936-275475 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 275522-276184 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 276186-277328 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 277338-277868 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 277865-279433 bp Gene: cd09641:cas3HD Type: Type-I Location: 279436-282117 bp CRISPR array Location: 282890-283589 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 282890-283589 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 273233-274237 bp]: array | spacers
           [Locus range 282890-283589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXBG01000021.1 Pseudomonas aeruginosa strain MCF178 IPC1366_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 29912 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 322-1489 bp Zoom in on locus 1 x20 CRISPR array Location: 322-1489 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 322-1489 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 322-1489 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXBG01000018.1 Pseudomonas aeruginosa strain MCF178 IPC1366_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 47231 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 310-10487 bp Zoom in on locus 1 x2 x24 CRISPR array Location: 310-399 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 310-399 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09718:cas1 Type: universal Location: 759-1733 bp Gene: COG1203:cas3 Type: Type-I Location: 1730-4960 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5018-6322 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6309-7292 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7303-8331 bp Gene: cd09739:cas6f Type: other Location: 8335-8898 bp CRISPR array Location: 9081-10487 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 9081-10487 bp Num of repeats: 24 Spacers: s2-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 310-399 bp]: array | spacers
           [Locus range 9081-10487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)