CRISPRone

CRISPRone report for GCA_003974905.1_ASM397490v1

♦ Seq 1: RXBQ01000014.1 Pseudomonas aeruginosa strain JYH23 IPC1234_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 208795 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99539-109407 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 99539-100055 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 99539-100055 bp Num of repeats: 9 Spacers: s1-s8 Gene: pfam09707:cas2 Type: universal Location: 100120-100419 bp Gene: cd09719:cas1 Type: universal Location: 100416-100727 bp Gene: pfam08798:cas6e Type: other Location: 100754-101293 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 101340-102002 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 102004-103146 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 103156-103686 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 103683-105251 bp Gene: cd09641:cas3HD Type: Type-I Location: 105254-107935 bp CRISPR array Location: 108708-109407 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 108708-109407 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 99539-100055 bp]: array | spacers
           [Locus range 108708-109407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)