CRISPRone

CRISPRone report for GCA_003975025.1_ASM397502v1

♦ Seq 1: RXCA01000006.1 Pseudomonas aeruginosa strain MSH3 IPC1178_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 416532 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415662-416229 bp Zoom in on locus 1 x10 CRISPR array Location: 415662-416229 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 415662-416229 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415662-416229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXCA01000002.1 Pseudomonas aeruginosa strain MSH3 IPC1178_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 1440234 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 946133-955367 bp Zoom in on locus 1 x9 x3 CRISPR array Location: 946133-946640 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 946133-946640 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 946823-947386 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 947390-948418 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 948429-949412 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 949399-950703 bp Gene: COG1203:cas3 Type: Type-I Location: 950761-953991 bp Gene: cd09718:cas1 Type: universal Location: 953988-954962 bp CRISPR array Location: 955220-955367 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 955220-955367 bp Num of repeats: 3 Spacers: s9-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 946133-946640 bp]: array | spacers
           [Locus range 955220-955367 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)