CRISPRone

CRISPRone report for GCA_003975085.1_ASM397508v1

♦ Seq 1: RXCC01000012.1 Pseudomonas aeruginosa strain P1885 IPC1150_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 164253 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 320-10089 bp Zoom in on locus 1 x10 x11 CRISPR array Location: 320-878 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 320-878 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 1061-1624 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1628-2656 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2667-3650 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3637-4941 bp Gene: COG1203:cas3 Type: Type-I Location: 4999-8229 bp Gene: cd09718:cas1 Type: universal Location: 8226-9200 bp CRISPR array Location: 9462-10089 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 9462-10089 bp Num of repeats: 11 Spacers: s10-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 320-878 bp]: array | spacers
           [Locus range 9462-10089 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXCC01000013.1 Pseudomonas aeruginosa strain P1885 IPC1150_13.1, whole genome shotgun sequence

⇒Summary: seq-len = 95034 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13248-13815 bp Zoom in on locus 1 x10 CRISPR array Location: 13248-13815 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 13248-13815 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13248-13815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXCC01000001.1 Pseudomonas aeruginosa strain P1885 IPC1150_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1230438 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 413576-413904 bp 2 Locus 2: 929654-930161 bp 3 Locus 3: 1014750-1015438 bp Zoom in on locus 1 x6 Zoom in on locus 2 x9 Zoom in on locus 3 x12 CRISPR array Location: 413576-413904 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 413576-413904 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 929654-930161 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 929654-930161 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 1014750-1015438 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 1014750-1015438 bp Num of repeats: 12 Spacers: s14-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 413576-413904 bp]: array | spacers
           [Locus range 929654-930161 bp]: array | spacers
           [Locus range 1014750-1015438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)