CRISPRone

CRISPRone report for GCA_003975245.1_ASM397524v1

♦ Seq 1: RXCT01000019.1 Pseudomonas aeruginosa strain W15Dec14 IPC826_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 81501 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37728-48648 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 37728-38896 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37728-38896 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39079-39642 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39646-40674 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40685-41668 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41655-42959 bp Gene: COG1203:cas3 Type: Type-I Location: 43017-46247 bp Gene: cd09718:cas1 Type: universal Location: 46244-47218 bp CRISPR array Location: 47479-48648 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47479-48648 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37728-38896 bp]: array | spacers
           [Locus range 47479-48648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXCT01000002.1 Pseudomonas aeruginosa strain W15Dec14 IPC826_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 739510 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 273222-283578 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 273222-274226 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 273222-274226 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 274291-274590 bp Gene: cd09719:cas1 Type: universal Location: 274587-274898 bp Gene: pfam08798:cas6e Type: other Location: 274925-275464 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 275511-276173 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 276175-277317 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 277327-277857 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 277854-279422 bp Gene: cd09641:cas3HD Type: Type-I Location: 279425-282106 bp CRISPR array Location: 282879-283578 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 282879-283578 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 273222-274226 bp]: array | spacers
           [Locus range 282879-283578 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)