CRISPRone

CRISPRone report for GCA_003975385.1_ASM397538v1

♦ Seq 1: RXDD01000023.1 Pseudomonas aeruginosa strain Jp100 IPC750_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 49546 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1146-12431 bp Zoom in on locus 1 x19 x26 CRISPR array Location: 1146-2254 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1146-2254 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2515-3489 bp Gene: COG1203:cas3 Type: Type-I Location: 3486-6716 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6774-8078 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8065-9048 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9059-10087 bp Gene: cd09739:cas6f Type: other Location: 10091-10654 bp CRISPR array Location: 10904-12431 bp Num of repeats: 26 Spacers: s19-s43 CRISPR array Location: 10904-12431 bp Num of repeats: 26 Spacers: s19-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1146-2254 bp]: array | spacers
           [Locus range 10904-12431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXDD01000013.1 Pseudomonas aeruginosa strain Jp100 IPC750_13.1, whole genome shotgun sequence

⇒Summary: seq-len = 191701 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 149005-158624 bp Zoom in on locus 1 x28 Gene: cd09641:cas3HD Type: Type-I Location: 149005-151239 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 151289-151963 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 151960-153753 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 153750-154619 bp Gene: pfam01930:cas4 Type: Type-I Location: 154638-155270 bp Gene: cd09721:cas1 Type: universal Location: 155274-156314 bp Gene: cd09725:cas2 Type: universal Location: 156324-156614 bp CRISPR array Location: 156796-158624 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 156796-158624 bp Num of repeats: 28 Spacers: s1-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 156796-158624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)