CRISPRone

CRISPRone report for GCA_003975425.1_ASM397542v1

♦ Seq 1: RXDJ01000003.1 Pseudomonas aeruginosa strain AMT0026-2 IPC554_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 810743 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33775-44219 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 33775-34883 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 33775-34883 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 35143-36117 bp Gene: COG1203:cas3 Type: Type-I Location: 36114-39344 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39402-40706 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40693-41676 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41687-42715 bp Gene: cd09739:cas6f Type: other Location: 42719-43282 bp CRISPR array Location: 43532-44219 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 43532-44219 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33775-34883 bp]: array | spacers
           [Locus range 43532-44219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)