CRISPRone

CRISPRone report for GCA_003975485.1_ASM397548v1

♦ Seq 1: RXDN01000015.1 Pseudomonas aeruginosa strain AMT0006-64 IPC545_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 49271 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38400-48758 bp Zoom in on locus 1 x15 x10 CRISPR array Location: 38400-39267 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38400-39267 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39450-40013 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40017-41045 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41056-42039 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42026-43327 bp Gene: COG1203:cas3 Type: Type-I Location: 43738-46968 bp Gene: cd09718:cas1 Type: universal Location: 46965-47939 bp CRISPR array Location: 48191-48758 bp Num of repeats: 10 Spacers: s15-s23 CRISPR array Location: 48191-48758 bp Num of repeats: 10 Spacers: s15-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38400-39267 bp]: array | spacers
           [Locus range 48191-48758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXDN01000009.1 Pseudomonas aeruginosa strain AMT0006-64 IPC545_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 510567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208779-209407 bp Zoom in on locus 1 x11 CRISPR array Location: 208779-209407 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 208779-209407 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208779-209407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)