CRISPRone

CRISPRone report for GCA_003975535.1_ASM397553v1

♦ Seq 1: RXDQ01000017.1 Pseudomonas aeruginosa strain AMT0005-135 IPC540_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 89854 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21196-31938 bp Zoom in on locus 1 x31 x6 CRISPR array Location: 21196-23027 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 21196-23027 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09718:cas1 Type: universal Location: 23287-24261 bp Gene: COG1203:cas3 Type: Type-I Location: 24258-27488 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27546-28850 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28837-29820 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29831-30859 bp Gene: cd09739:cas6f Type: other Location: 30863-31426 bp CRISPR array Location: 31611-31938 bp Num of repeats: 6 Spacers: s31-s35 CRISPR array Location: 31611-31938 bp Num of repeats: 6 Spacers: s31-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21196-23027 bp]: array | spacers
           [Locus range 31611-31938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXDQ01000001.1 Pseudomonas aeruginosa strain AMT0005-135 IPC540_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 903093 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 417328-418135 bp Zoom in on locus 1 x14 CRISPR array Location: 417328-418135 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 417328-418135 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 417328-418135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)