CRISPRone

CRISPRone report for GCA_003975555.1_ASM397555v1

♦ Seq 1: RXDW01000031.1 Pseudomonas aeruginosa strain AUS449 IPC451_31.1, whole genome shotgun sequence

⇒Summary: seq-len = 48956 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1279-11059 bp Zoom in on locus 1 x14 x7 CRISPR array Location: 1279-2088 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1279-2088 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 2348-3322 bp Gene: COG1203:cas3 Type: Type-I Location: 3319-6549 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6607-7911 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7898-8881 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8892-9920 bp Gene: cd09739:cas6f Type: other Location: 9924-10487 bp CRISPR array Location: 10672-11059 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 10672-11059 bp Num of repeats: 7 Spacers: s14-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1279-2088 bp]: array | spacers
           [Locus range 10672-11059 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXDW01000005.1 Pseudomonas aeruginosa strain AUS449 IPC451_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 488044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 375413-376642 bp Zoom in on locus 1 x21 CRISPR array Location: 375413-376642 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 375413-376642 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 375413-376642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)