CRISPRone

CRISPRone report for GCA_003975765.1_ASM397576v1

♦ Seq 1: RXEL01000006.1 Pseudomonas aeruginosa strain AUS157 IPC396_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 417091 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415829-416576 bp Zoom in on locus 1 x13 CRISPR array Location: 415829-416576 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 415829-416576 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415829-416576 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXEL01000001.1 Pseudomonas aeruginosa strain AUS157 IPC396_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1392265 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 584652-595710 bp Zoom in on locus 1 x12 x19 CRISPR array Location: 584652-585352 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 584652-585352 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 586124-588805 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 588808-590376 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 590373-590903 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 590913-592055 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 592057-592719 bp Gene: pfam08798:cas6e Type: other Location: 592694-593305 bp Gene: cd09719:cas1 Type: universal Location: 593332-594222 bp Gene: pfam09707:cas2 Type: universal Location: 594219-594518 bp CRISPR array Location: 594583-595710 bp Num of repeats: 19 Spacers: s12-s29 CRISPR array Location: 594583-595710 bp Num of repeats: 19 Spacers: s12-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 584652-585352 bp]: array | spacers
           [Locus range 594583-595710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXEL01000015.1 Pseudomonas aeruginosa strain AUS157 IPC396_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 65904 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55260-65390 bp Zoom in on locus 1 x18 x9 CRISPR array Location: 55260-56309 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 55260-56309 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 56492-57055 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 57059-58087 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 58098-59081 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 59068-60372 bp Gene: COG1203:cas3 Type: Type-I Location: 60430-63660 bp Gene: cd09718:cas1 Type: universal Location: 63657-64631 bp CRISPR array Location: 64883-65390 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 64883-65390 bp Num of repeats: 9 Spacers: s18-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55260-56309 bp]: array | spacers
           [Locus range 64883-65390 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)