CRISPRone

CRISPRone report for GCA_003975885.1_ASM397588v1

♦ Seq 1: RXBV01000017.1 Pseudomonas aeruginosa strain JYH13 IPC1224_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 77544 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38016-48191 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 38016-38514 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38016-38514 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 38697-39260 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39264-40292 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40303-41349 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41336-42622 bp Gene: COG1203:cas3 Type: Type-I Location: 43037-46267 bp Gene: cd09718:cas1 Type: universal Location: 46264-47238 bp CRISPR array Location: 47504-48191 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 47504-48191 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38016-38514 bp]: array | spacers
           [Locus range 47504-48191 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXBV01000008.1 Pseudomonas aeruginosa strain JYH13 IPC1224_8.1, whole genome shotgun sequence

⇒Summary: seq-len = 220471 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145838-146346 bp Zoom in on locus 1 x9 CRISPR array Location: 145838-146346 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 145838-146346 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 145838-146346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)