CRISPRone

CRISPRone report for GCA_003975955.1_ASM397595v1

♦ Seq 1: RXCE01000017.1 Pseudomonas aeruginosa strain T3677 IPC1136_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 121776 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41810-52479 bp Zoom in on locus 1 x21 x15 CRISPR array Location: 41810-43038 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 41810-43038 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09718:cas1 Type: universal Location: 43289-44263 bp Gene: COG1203:cas3 Type: Type-I Location: 44260-47490 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 47548-48852 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 48839-49822 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 49833-50861 bp Gene: cd09739:cas6f Type: other Location: 50865-51428 bp CRISPR array Location: 51612-52479 bp Num of repeats: 15 Spacers: s21-s34 CRISPR array Location: 51612-52479 bp Num of repeats: 15 Spacers: s21-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41810-43038 bp]: array | spacers
           [Locus range 51612-52479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXCE01000001.1 Pseudomonas aeruginosa strain T3677 IPC1136_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 972162 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 302973-303300 bp Zoom in on locus 1 x6 CRISPR array Location: 302973-303300 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 302973-303300 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 302973-303300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)