CRISPRone

CRISPRone report for GCA_003975965.1_ASM397596v1

♦ Seq 1: RXCF01000009.1 Pseudomonas aeruginosa strain T3354 IPC1135_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 339489 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98457-106718 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98457-100067 bp Gene: pfam13280:WYL Type: other Location: 100228-101244 bp Gene: COG2378:WYL Type: other Location: 101986-102828 bp Gene: unk Type: unknown Location: 102959-103246 bp Gene: unk Type: unknown Location: 103381-103959 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104352-106718 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXCF01000001.1 Pseudomonas aeruginosa strain T3354 IPC1135_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 868611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 443773-444161 bp Zoom in on locus 1 x7 CRISPR array Location: 443773-444161 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 443773-444161 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 443773-444161 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXCF01000002.1 Pseudomonas aeruginosa strain T3354 IPC1135_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 726957 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182919-194197 bp Zoom in on locus 1 x25 x21 CRISPR array Location: 182919-184388 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 182919-184388 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 184649-185623 bp Gene: COG1203:cas3 Type: Type-I Location: 185620-188850 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 188908-190212 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 190199-191182 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 191193-192221 bp Gene: cd09739:cas6f Type: other Location: 192225-192788 bp CRISPR array Location: 192973-194197 bp Num of repeats: 21 Spacers: s25-s44 CRISPR array Location: 192973-194197 bp Num of repeats: 21 Spacers: s25-s44 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182919-184388 bp]: array | spacers
           [Locus range 192973-194197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)