CRISPRone

CRISPRone report for GCA_003976225.1_ASM397622v1

♦ Seq 1: RXDG01000023.1 Pseudomonas aeruginosa strain AMT0047-125 IPC564_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 68091 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57231-67072 bp Zoom in on locus 1 x16 x6 CRISPR array Location: 57231-58160 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 57231-58160 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 58344-58907 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 58911-59939 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 59950-60933 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 60920-62224 bp Gene: COG1203:cas3 Type: Type-I Location: 62282-65512 bp Gene: cd09718:cas1 Type: universal Location: 65509-66483 bp CRISPR array Location: 66744-67072 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 66744-67072 bp Num of repeats: 6 Spacers: s16-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 57231-58160 bp]: array | spacers
           [Locus range 66744-67072 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXDG01000003.1 Pseudomonas aeruginosa strain AMT0047-125 IPC564_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 436629 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125-1473 bp Zoom in on locus 1 x23 CRISPR array Location: 125-1473 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 125-1473 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125-1473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXDG01000009.1 Pseudomonas aeruginosa strain AMT0047-125 IPC564_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 297677 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 335-1322 bp Zoom in on locus 1 x17 CRISPR array Location: 335-1322 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 335-1322 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 335-1322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)