CRISPRone

CRISPRone report for GCA_003976295.1_ASM397629v1

♦ Seq 1: RXDO01000017.1 Pseudomonas aeruginosa strain AMT0005-137 IPC542_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 90299 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22526-33268 bp Zoom in on locus 1 x31 x6 CRISPR array Location: 22526-24357 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 22526-24357 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09718:cas1 Type: universal Location: 24617-25591 bp Gene: COG1203:cas3 Type: Type-I Location: 25588-28818 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28876-30180 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 30167-31150 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 31161-32189 bp Gene: cd09739:cas6f Type: other Location: 32193-32756 bp CRISPR array Location: 32941-33268 bp Num of repeats: 6 Spacers: s31-s35 CRISPR array Location: 32941-33268 bp Num of repeats: 6 Spacers: s31-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22526-24357 bp]: array | spacers
           [Locus range 32941-33268 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXDO01000001.1 Pseudomonas aeruginosa strain AMT0005-137 IPC542_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 902550 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 416585-417392 bp Zoom in on locus 1 x14 CRISPR array Location: 416585-417392 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 416585-417392 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 416585-417392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)