CRISPRone

CRISPRone report for GCA_003976495.1_ASM397649v1

♦ Seq 1: RXEM01000006.1 Pseudomonas aeruginosa strain AUS156 IPC395_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 401828 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55333-66330 bp Zoom in on locus 1 x12 x18 CRISPR array Location: 55333-56033 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 55333-56033 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 56805-59486 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 59489-61057 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 61054-61584 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 61594-62736 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 62738-63400 bp Gene: pfam08798:cas6e Type: other Location: 63375-63986 bp Gene: cd09719:cas1 Type: universal Location: 64013-64903 bp Gene: pfam09707:cas2 Type: universal Location: 64900-65199 bp CRISPR array Location: 65264-66330 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 65264-66330 bp Num of repeats: 18 Spacers: s12-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55333-56033 bp]: array | spacers
           [Locus range 65264-66330 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXEM01000003.1 Pseudomonas aeruginosa strain AUS156 IPC395_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 503579 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1083-1650 bp Zoom in on locus 1 x10 CRISPR array Location: 1083-1650 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1083-1650 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1083-1650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)