CRISPRone

CRISPRone report for GCA_003976555.1_ASM397655v1

♦ Seq 1: RXET01000004.1 Pseudomonas aeruginosa strain AUS128 IPC371_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 677647 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91284-92573 bp Zoom in on locus 1 x22 CRISPR array Location: 91284-92573 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 91284-92573 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91284-92573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXET01000006.1 Pseudomonas aeruginosa strain AUS128 IPC371_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 342895 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3210-14719 bp Zoom in on locus 1 x21 x11 CRISPR array Location: 3210-4458 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 3210-4458 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09707:cas2 Type: universal Location: 4523-4822 bp Gene: cd09719:cas1 Type: universal Location: 4819-5709 bp Gene: pfam08798:cas6e Type: other Location: 5736-6275 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 6322-6984 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 6986-8128 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 8138-8668 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 8665-10233 bp Gene: cd09641:cas3HD Type: Type-I Location: 10594-13302 bp CRISPR array Location: 14079-14719 bp Num of repeats: 11 Spacers: s21-s30 CRISPR array Location: 14079-14719 bp Num of repeats: 11 Spacers: s21-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3210-4458 bp]: array | spacers
           [Locus range 14079-14719 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXET01000014.1 Pseudomonas aeruginosa strain AUS128 IPC371_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 49489 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37694-48967 bp Zoom in on locus 1 x21 x19 CRISPR array Location: 37694-38923 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 37694-38923 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 39107-39670 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39674-40702 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40713-41696 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41683-42984 bp Gene: COG1203:cas3 Type: Type-I Location: 43395-46625 bp Gene: cd09718:cas1 Type: universal Location: 46622-47596 bp CRISPR array Location: 47857-48967 bp Num of repeats: 19 Spacers: s21-s38 CRISPR array Location: 47857-48967 bp Num of repeats: 19 Spacers: s21-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37694-38923 bp]: array | spacers
           [Locus range 47857-48967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)