CRISPRone

CRISPRone report for GCA_003976655.1_ASM397665v1

♦ Seq 1: RXFD01000002.1 Pseudomonas aeruginosa strain AUS227 IPC253_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 762861 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 474745-475312 bp Zoom in on locus 1 x10 CRISPR array Location: 474745-475312 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 474745-475312 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 474745-475312 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXFD01000003.1 Pseudomonas aeruginosa strain AUS227 IPC253_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 525930 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 494742-505596 bp Zoom in on locus 1 x9 x24 CRISPR array Location: 494742-495250 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 494742-495250 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 495434-495997 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 496001-497029 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 497040-498023 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 498010-499311 bp Gene: COG1203:cas3 Type: Type-I Location: 499722-502952 bp Gene: cd09718:cas1 Type: universal Location: 502949-503923 bp CRISPR array Location: 504188-505596 bp Num of repeats: 24 Spacers: s9-s31 CRISPR array Location: 504188-505596 bp Num of repeats: 24 Spacers: s9-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 494742-495250 bp]: array | spacers
           [Locus range 504188-505596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)