CRISPRone

CRISPRone report for GCA_003977965.1_ASM397796v1

♦ Seq 1: RXVG01000044.1 Pseudomonas aeruginosa strain MRSN18803 MRSN18803_contig00044, whole genome shotgun sequence

⇒Summary: seq-len = 48336 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 860-10929 bp Zoom in on locus 1 x21 x5 CRISPR array Location: 860-2089 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 860-2089 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09718:cas1 Type: universal Location: 2340-3314 bp Gene: COG1203:cas3 Type: Type-I Location: 3311-6541 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6599-7903 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7890-8873 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8884-9912 bp Gene: cd09739:cas6f Type: other Location: 9916-10479 bp CRISPR array Location: 10663-10929 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 10663-10929 bp Num of repeats: 5 Spacers: s21-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 860-2089 bp]: array | spacers
           [Locus range 10663-10929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXVG01000006.1 Pseudomonas aeruginosa strain MRSN18803 MRSN18803_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 25266 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12543-23662 bp Zoom in on locus 1 x15 x17 CRISPR array Location: 12543-13426 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 12543-13426 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09641:cas3HD Type: Type-I Location: 14198-16879 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 16882-18450 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 18447-18977 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 18987-20129 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 20131-20793 bp Gene: pfam08798:cas6e Type: other Location: 20768-21379 bp Gene: cd09719:cas1 Type: universal Location: 21406-22296 bp Gene: pfam09707:cas2 Type: universal Location: 22293-22592 bp CRISPR array Location: 22657-23662 bp Num of repeats: 17 Spacers: s15-s30 CRISPR array Location: 22657-23662 bp Num of repeats: 17 Spacers: s15-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12543-13426 bp]: array | spacers
           [Locus range 22657-23662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)