CRISPRone

CRISPRone report for GCA_003991465.1_ASM399146v1

♦ Seq 1: CP034409.1 Pseudomonas aeruginosa strain SP4527 chromosome, complete genome

⇒Summary: seq-len = 7005215 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1385029-1395338 bp 2 Locus 2: 4816268-4826129 bp 3 Locus 3: 6868351-6868799 bp Zoom in on locus 1 x17 x13 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 1385029-1386017 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1385029-1386017 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 1386200-1386763 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1386767-1387795 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1387806-1388789 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1388776-1390080 bp Gene: COG1203:cas3 Type: Type-I Location: 1390138-1393368 bp Gene: cd09718:cas1 Type: universal Location: 1393365-1394339 bp CRISPR array Location: 1394591-1395338 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 1394591-1395338 bp Num of repeats: 13 Spacers: s17-s28 Gene: COG1199:DinG Type: Subtype-IV-A Location: 4816268-4818634 bp Gene: unk Type: unknown Location: 4819027-4819605 bp Gene: unk Type: unknown Location: 4819749-4819904 bp Gene: pfam13280:WYL Type: other Location: 4820158-4821033 bp Gene: unk Type: unknown Location: 4821048-4821581 bp Gene: unk Type: unknown Location: 4821891-4822070 bp Gene: pfam13280:WYL Type: other Location: 4823342-4824358 bp Gene: mkCas0115:csx3 Type: other Location: 4824519-4826129 bp CRISPR array Location: 6868351-6868799 bp Num of repeats: 8 Spacers: s29-s35 CRISPR array Location: 6868351-6868799 bp Num of repeats: 8 Spacers: s29-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1385029-1386017 bp]: array | spacers
           [Locus range 1394591-1395338 bp]: array | spacers
           [Locus range 6868351-6868799 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)